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1

Accidental father-to-son HIV-1 transmission during the seroconversion period

Ezeonwumelu, Ifeanyi, Bártolo, Inês, Martin, Francisco, Abecasis, Ana B, Campos, Teresa, Romero-Severson, Ethan O., Leitner, Thomas, Taveira, Nuno

Journal:

AIDS Research and Human Retroviruses

Year:

2018

Language:

english

File:

PDF, 808 KB

english, 2018

2

Detectable signals of episodic risk effects on acute HIV transmission: Strategies for analyzing transmission systems using genetic data

Alam, Shah Jamal, Zhang, Xinyu, Romero-Severson, Ethan Obie, Henry, Christopher, Zhong, Lin, Volz, Erik M., Brenner, Bluma G., Koopman, James S.

Journal:

Year:

2013

Language:

english

File:

PDF, 1.42 MB

english, 2013

3

Acute-Stage Transmission of HIV

Romero-Severson, Ethan Obie, Alam, Shah Jamal, Volz, Erik, Koopman, James

Journal:

Year:

2013

Language:

english

File:

PDF, 698 KB

english, 2013

4

HIV-1 Transmission during Early Infection in Men Who Have Sex with Men: A Phylodynamic Analysis

Volz, Erik M., Ionides, Edward, Romero-Severson, Ethan O., Brandt, Mary-Grace, Mokotoff, Eve, Koopman, James S., Hallett, Timothy B.

Journal:

Year:

2013

Language:

english

File:

PDF, 2.70 MB

english, 2013

5

Trends of HIV-1 incidence with credible intervals in Sweden 2002–09 reconstructed using a dynamic model of within-patient IgG growth

Romero-Severson, Ethan Obie, Lee Petrie, Cody, Ionides, Edward, Albert, Jan, Leitner, Thomas

Journal:

International Journal of Epidemiology

Year:

2015

Language:

english

File:

PDF, 381 KB

english, 2015

6

Phylogenetically resolving epidemiologic linkage

Romero-Severson, Ethan O., Bulla, Ingo, Leitner, Thomas

Journal:

Proceedings of the National Academy of Sciences

Year:

2016

Language:

english

File:

PDF, 878 KB

english, 2016

7

Episodic HIV Risk Behavior Can Greatly Amplify HIV Prevalence and the Fraction of Transmissions from Acute HIV Infection

Zhang, Xinyu, Zhong, Lin, Romero-Severson, Ethan, Alam, Shah Jamal, Henry, Christopher J., Volz, Erik M., Koopman, James S.

Journal:

Statistical Communications in Infectious Diseases

Year:

2012

Language:

english

File:

PDF, 3.06 MB

english, 2012

8

Dynamic Sex Roles Among Men Who Have Sex With Men and Transmissions From Primary HIV Infection

Alam, Shah Jamal, Romero-Severson, Ethan, Kim, Jong-Hoon, Emond, Gilbert, Koopman, James S.

Journal:

Year:

2010

Language:

english

File:

PDF, 813 KB

english, 2010

9

Phylodynamic Inference across Epidemic Scales

Volz, Erik M., Romero-Severson, Ethan, Leitner, Thomas

Journal:

Molecular Biology and Evolution

Year:

2017

Language:

english

File:

PDF, 1.25 MB

english, 2017

10

Donor-Recipient Identification in Para- and Poly-phyletic Trees Under Alternative HIV-1 Transmission Hypotheses Using Approximate Bayesian Computation

Romero-Severson, Ethan O., Bulla, Ingo, Hengartner, Nick, Bártolo, Inês, Abecasis, Ana, Azevedo-Pereira, José M., Taveira, Nuno, Leitner, Thomas

Journal:

Year:

2017

Language:

english

File:

PDF, 3.61 MB

english, 2017

11

Tracking HIV-1 recombination to resolve its contribution to HIV-1 evolution in natural infection

Song, Hongshuo, Giorgi, Elena E., Ganusov, Vitaly V., Cai, Fangping, Athreya, Gayathri, Yoon, Hyejin, Carja, Oana, Hora, Bhavna, Hraber, Peter, Romero-Severson, Ethan, Jiang, Chunlai, Li, Xiaojun, Wan

Journal:

Nature Communications

Year:

2018

Language:

english

File:

PDF, 2.54 MB

english, 2018

12

Recombination Enhances HIV-1 Envelope Diversity by Facilitating the Survival of Latent Genomic Fragments in the Plasma Virus Population

Immonen, Taina T., Conway, Jessica M., Romero-Severson, Ethan O., Perelson, Alan S., Leitner, Thomas, Kouyos, Roger Dimitri

Journal:

PLoS Computational Biology

Year:

2015

Language:

english

File:

PDF, 7.07 MB

english, 2015

13

Inference of Transmission Network Structure from HIV Phylogenetic Trees

Giardina, Federica, Romero-Severson, Ethan Obie, Albert, Jan, Britton, Tom, Leitner, Thomas, Tanaka, Mark M.

Journal:

PLoS Computational Biology

Year:

2017

Language:

english

File:

PDF, 1.92 MB

english, 2017

14

Noise Is Not Error: Detecting Parametric Heterogeneity Between Epidemiologic Time Series

Romero-Severson, Ethan O., Ribeiro, Ruy M., Castro, Mario

Journal:

Frontiers in Microbiology

Year:

2018

Language:

english

File:

PDF, 3.27 MB

english, 2018

15

Phylogenetic patterns recover known HIV epidemiological relationships and reveal common transmission of multiple variants

Leitner, Thomas, Romero-Severson, Ethan

Journal:

Nature Microbiology

Year:

2018

Language:

english

File:

PDF, 1.33 MB

english, 2018

16

Screening for hepatitis D and PEG-Interferon over Tenofovir enhance general hepatitis control efforts in Brazil

Goyal, Ashish, Romero-Severson, Ethan Obie, Chemin, Isabelle

Journal:

Year:

2018

Language:

english

File:

PDF, 3.30 MB

english, 2018

17

Sensitivity of joint contagiousness and susceptibility-based dynamic optimal control strategies for HIV prevention

Bulla, Ingo, Spickanll, Ian H., Gromov, Dmitry, Romero-Severson, Ethan Obie, Fu, Geng-Feng

Journal:

Year:

2018

Language:

english

File:

PDF, 3.37 MB

english, 2018

18

Systematic evaluation of the population-level effects of alternative treatment strategies on the basic reproduction number

Gromov, Dmitry, Bulla, Ingo, Romero-Severson, Ethan O.

Journal:

Journal of Theoretical Biology

Year:

2018

Language:

english

File:

PDF, 927 KB

english, 2018

19

Heterogeneity in Number and Type of Sexual Contacts in a Gay Urban Cohort

Romero-Severson, Ethan O., Alam, Shah Jamal, Volz, Erik M., Koopman, James S.

Journal:

Statistical Communications in Infectious Diseases

Year:

2012

File:

PDF, 427 KB

2012

20

Correction: Sensitivity of joint contagiousness and susceptibility-based dynamic optimal control strategies for HIV prevention

Bulla, Ingo, Spicknall, Ian H., Gromov, Dmitry, Romero-Severson, Ethan Obie

Journal:

Year:

2019

Language:

english

File:

PDF, 175 KB

english, 2019

21

Getting more from heterogeneous HIV-1 surveillance data in a high immigration country: estimation of incidence and undiagnosed population size using multiple biomarkers

Giardina, Federica, Romero-Severson, Ethan O, Axelsson, Maria, Svedhem, Veronica, Leitner, Thomas, Britton, Tom, Albert, Jan

Journal:

International Journal of Epidemiology

Year:

2019

Language:

english

File:

PDF, 585 KB

english, 2019

22

Getting more from heterogeneous HIV-1 surveillance data in a high immigration country: estimation of incidence and undiagnosed population size using multiple biomarkers

Giardina, Federica, Romero-Severson, Ethan O, Axelsson, Maria, Svedhem, Veronica, Leitner, Thomas, Britton, Tom, Albert, Jan

Journal:

International Journal of Epidemiology

Year:

2019

File:

PDF, 585 KB

2019

23

Assessing Uncertainty in an Anatomical Site-Specific Gonorrhea Transmission Model of Men Who Have Sex With Men

Spicknall, Ian H., Mayer, Kenneth H., Aral, Sevgi O., Romero-Severson, Ethan O.

Journal:

Sexually Transmitted Diseases

Year:

2019

File:

PDF, 832 KB

2019

24

High Contagiousness and Rapid Spread of Severe Acute Respiratory Syndrome Coronavirus 2

Sanche, Steven, Lin, Yen Ting, Xu, Chonggang, Romero-Severson, Ethan, Hengartner, Nick, Ke, Ruian

Journal:

Emerging Infectious Diseases

Year:

2020

File:

PDF, 2.08 MB

2020

25

Change in global transmission rates of COVID-19 through May 6 2020

Romero-Severson, Ethan Obie, Hengartner, Nick, Meadors, Grant, Ke, Ruian, Lythe, Grant

Journal:

Year:

2020

File:

PDF, 1.32 MB

2020

26

What Should Health Departments Do with HIV Sequence Data?

Romero-Severson, Ethan, Nasir, Arshan, Leitner, Thomas

Journal:

Year:

2020

File:

PDF, 2.29 MB

2020

27

Within-Host Phenotypic Evolution and the Population-Level Control of Chronic Viral Infections by Treatment and Prophylaxis

Gromov, Dmitry, Romero-Severson, Ethan O.

Journal:

Year:

2020

File:

PDF, 782 KB

2020

28

[BMJ Publishing Group Ltd Abstracts for the STI & HIV World Congress (Joint Meeting of the 23rd ISSTDR and 20th IUSTI), July 14â17, 2019, Vancouver, Canada - ()] Oral Presentations - O19.1âModel-based study design for estimation of route-specific gonorrheal transmission probabilities

Romero-Severson, Ethan, Spicknall, Ian

File:

PDF, 73 KB

29

Investigating the Concept and Origin of Viruses

Nasir, Arshan, Romero-Severson, Ethan, Claverie, Jean-Michel

Journal:

Trends in Microbiology

Year:

2020

File:

PDF, 777 KB

2020